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GrainGenes Marker Report: k08433

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Locus	k08433
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 26.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS17B21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = AGCAGCATGCRCATGTGATGG Parent 1 SNP sequence = AGCAGCATGCACATGTGATGG Parent 2 SNP sequence = AGCAGCATGCGCATGTGATGG Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaGS17B21
Locus	k08433
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = thionin Osthi1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCAGATTTGCTGTAGTGCCG Right 5' - CACAACGTCACCAAGGACTG
Sequence	AV917928
PCR size	358