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GrainGenes Marker Report: k08386

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Locus	k08386
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 203.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS31K06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = AAAGATCTGGRGGCGAGGCTC Parent 1 SNP sequence = AAAGATCTGGAGGCGAGGCTC Parent 2 SNP sequence = AAAGATCTGGGGGCGAGGCTC SNP = A/C SNP structure (UNICODE) = TAGTATAGCCMCACTACTGAC Parent 1 SNP sequence = TAGTATAGCCACACTACTGAC Parent 2 SNP sequence = TAGTATAGCCCCACTACTGAC SNP structure (UNICODE) = TGTCCCTTGCRAAGCAGGCTG Parent 1 SNP sequence = TGTCCCTTGCAAAGCAGGCTG Parent 2 SNP sequence = TGTCCCTTGCGAAGCAGGCTG SNP = C/G SNP structure (UNICODE) = GGACACCACASAGAGTTAGAT Parent 1 SNP sequence = GGACACCACACAGAGTTAGAT Parent 2 SNP sequence = GGACACCACAGAGAGTTAGAT
Probe for Locus	BaGS31K06
Locus	k08386
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTGGTTGCTCCACAAGAACA Right 5' - ACCAATACTCGGACAGGCAC
Sequence	BJ466329
PCR size	467