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GrainGenes Marker Report: k08384

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Locus	k08384
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS33I07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = GAGTGTGGTARCGGTCACCCA Parent 1 SNP sequence = GAGTGTGGTAACGGTCACCCA Parent 2 SNP sequence = GAGTGTGGTAGCGGTCACCCA SNP = T/C SNP structure (UNICODE) = GAGACTGTGAYGCATTCAGCC Parent 1 SNP sequence = GAGACTGTGATGCATTCAGCC Parent 2 SNP sequence = GAGACTGTGACGCATTCAGCC SNP = G/A SNP structure (UNICODE) = ACCGCTTGCARATGCCAACTA Parent 1 SNP sequence = ACCGCTTGCAGATGCCAACTA Parent 2 SNP sequence = ACCGCTTGCAAATGCCAACTA SNP = C/G SNP structure (UNICODE) = AGTACCAATASCTCATAAGCA Parent 1 SNP sequence = AGTACCAATACCTCATAAGCA Parent 2 SNP sequence = AGTACCAATAGCTCATAAGCA
Probe for Locus	BaGS33I07
Locus	k08384
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAACACGAATAACGAAACG Right 5' - CATCGAGAGCAAAGACCAGA
Sequence	AV921451
PCR size	453