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GrainGenes Marker Report: k08380

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Locus	k08380
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 356.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS22E05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = AATCATCTGCRCTAGCATTTC Parent 1 SNP sequence = AATCATCTGCACTAGCATTTC Parent 2 SNP sequence = AATCATCTGCGCTAGCATTTC Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaGS22E05
Locus	k08380
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = RAB1Y [Lotus corniculatus var. japonicus]
Type	PCR
PCR primers	Left 5' - TATCGCTGAATGTGACGCTC Right 5' - GATCTCGATCGCTGACCAAT
Sequence	AV918787
PCR size	440