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GrainGenes Marker Report: k08319

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Locus	k08319
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 258.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS17E03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = A/C SNP structure (UNICODE) = AAAGAACACAMTGGTTGTTTT Parent 1 SNP sequence = AAAGAACACAATGGTTGTTTT Parent 2 SNP sequence = AAAGAACACACTGGTTGTTTT Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	BaGS17E03
Locus	k08319
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative transporter [Oryza sativa (japonica cultivar-group)] gb AAO17028.1 Putative transporter [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CATGCGACACCTACGAGAGA Right 5' - GAGAGTCACAGATGGCCACA
Sequence	AV917971
PCR size	436