GrainGenes Marker Report: k08317
Locus
k08317
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 355.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaGS5E06
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = SacII SNP = C/G SNP structure (UNICODE) = GGTCATCCGCSGCGCCGTGGT Parent 1 SNP sequence = GGTCATCCGCCGCGCCGTGGT Parent 2 SNP sequence = GGTCATCCGCGGCGCCGTGGT Recognized sequence for CAPs locus = CCGCGG
Probe for Locus
BaGS5E06
Locus
k08317
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative 1-deoxyxylulose 5-phosphate synthase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - CAAAAACCCACTGTCTGCAA
Right 5' - AGATACTTACTGCCACGGCG
Sequence
AV919267
PCR size
427
GrainGenes Marker Report: k08317
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