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GrainGenes Marker Report: k08310

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Locus	k08310
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 110
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS32B13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = ATTTTGCTCCRTATGTAGACT Parent 1 SNP sequence = ATTTTGCTCCATATGTAGACT Parent 2 SNP sequence = ATTTTGCTCCGTATGTAGACT SNP = T/C SNP structure (UNICODE) = ATAAGTCATTYGCGTAGTTTT Parent 1 SNP sequence = ATAAGTCATTTGCGTAGTTTT Parent 2 SNP sequence = ATAAGTCATTCGCGTAGTTTT SNP = C/T SNP structure (UNICODE) = AGAGAAAATAYGGGACGGCAG Parent 1 SNP sequence = AGAGAAAATACGGGACGGCAG Parent 2 SNP sequence = AGAGAAAATATGGGACGGCAG
Probe for Locus	BaGS32B13
Locus	k08310
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Ser/Thr protein phosphatase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGCTTCATTTCACGCATCA Right 5' - TTCAAGCTTTTGGATGGAGG
Sequence	BJ482869
PCR size	443