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GrainGenes Marker Report: k08269

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Locus	k08269
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 199
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS24M06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/A SNP structure (UNICODE) = GTTTGCCGACMATACCTCTTG Parent 1 SNP sequence = GTTTGCCGACCATACCTCTTG Parent 2 SNP sequence = GTTTGCCGACAATACCTCTTG SNP = A/G SNP structure (UNICODE) = CGTCATCCTCRTCATCGTCGG Parent 1 SNP sequence = CGTCATCCTCATCATCGTCGG Parent 2 SNP sequence = CGTCATCCTCGTCATCGTCGG SNP = G/A SNP structure (UNICODE) = ACCTTCTTGTRAACTGCTTCC Parent 1 SNP sequence = ACCTTCTTGTGAACTGCTTCC Parent 2 SNP sequence = ACCTTCTTGTAAACTGCTTCC SNP structure (UNICODE) = GCTAACAACARGGTTGAAACA Parent 1 SNP sequence = GCTAACAACAGGGTTGAAACA Parent 2 SNP sequence = GCTAACAACAAGGTTGAAACA
Probe for Locus	BaGS24M06
Locus	k08269
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 60S ribosomal protein L5 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAAGGCCCACATGTTAGGTG Right 5' - CAACCTACCATCCATCTCGG
Sequence	BQ659067
PCR size	403