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GrainGenes Marker Report: k08255

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Locus	k08255
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 139.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS33E17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = C/G SNP structure (UNICODE) = CTGGGGCGCCSGAGCCGACGC Parent 1 SNP sequence = CTGGGGCGCCCGAGCCGACGC Parent 2 SNP sequence = CTGGGGCGCCGGAGCCGACGC Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	BaGS33E17
Locus	k08255
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = histone H2A.2 - wheat dbj BAA07276.1 protein H2A [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - ACAAATGGCAAACACAGCAA Right 5' - ACTGGGATGGGCTCTTTCTT
Sequence	BU984455
PCR size	424