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GrainGenes Marker Report: k08211

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Locus	k08211
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 12
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS31M01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = NcoI SNP = T/C SNP structure (UNICODE) = ACACGTGCCAYGGGTTGGCGG Parent 1 SNP sequence = ACACGTGCCATGGGTTGGCGG Parent 2 SNP sequence = ACACGTGCCACGGGTTGGCGG Recognized sequence for CAPs locus = CCATGG
Probe for Locus	BaGS31M01
Locus	k08211
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative fructose-bisphosphate aldolase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTGGTACAAGCAGAACGAA Right 5' - CCCCTGCTGATCTTCTCTGA
Sequence	BJ466354
PCR size	406