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GrainGenes Marker Report: k08202

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Locus	k08202
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 139.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS39P09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = CAGATATTCTRAGCTAGATTA Parent 1 SNP sequence = CAGATATTCTAAGCTAGATTA Parent 2 SNP sequence = CAGATATTCTGAGCTAGATTA SNP = A/C SNP structure (UNICODE) = ATCCCTGTCGMCATATCTTGG Parent 1 SNP sequence = ATCCCTGTCGACATATCTTGG Parent 2 SNP sequence = ATCCCTGTCGCCATATCTTGG
Probe for Locus	BaGS39P09
Locus	k08202
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0042L16.3 [Oryza sativa (japonica cultivar-group)] emb CAE01621.2 OSJNBa0042L16.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAATCAAAAAGCCCTTCCGT Right 5' - ACCTGGAGACTACTCGCTGC
Sequence	AJ460569
PCR size	371