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GrainGenes Marker Report: k08196

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Locus	k08196
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 30.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS20D21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = A/G SNP structure (UNICODE) = CCACCTTGGCRTCCTCCGGCA Parent 1 SNP sequence = CCACCTTGGCATCCTCCGGCA Parent 2 SNP sequence = CCACCTTGGCGTCCTCCGGCA Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaGS20D21
Locus	k08196
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = heat shock protein 18 - barley emb CAA45862.1 18 Kd heat shock protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - AACGCTGGCAAAGTTATTGG Right 5' - CAAACCGTGGAAGGCTTAAA
PCR size	376