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GrainGenes Marker Report: k08194

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Locus	k08194
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS30I11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = GGAGTGCCTCYGGTACCTCGT Parent 1 SNP sequence = GGAGTGCCTCTGGTACCTCGT Parent 2 SNP sequence = GGAGTGCCTCCGGTACCTCGT SNP = C/A SNP structure (UNICODE) = CCATCCTCCTMTTCGTGGGCT Parent 1 SNP sequence = CCATCCTCCTCTTCGTGGGCT Parent 2 SNP sequence = CCATCCTCCTATTCGTGGGCT SNP = G/C SNP structure (UNICODE) = TCTACCGAGASGAATGGATCG Parent 1 SNP sequence = TCTACCGAGAGGAATGGATCG Parent 2 SNP sequence = TCTACCGAGACGAATGGATCG
Probe for Locus	BaGS30I11
Locus	k08194
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = beta-glucosidase [Musa acuminata]
Type	PCR
PCR primers	Left 5' - ATCCTCAAAAGAGGGTGGGT Right 5' - CTCGTCTGGACAAGGGAAAG
Sequence	BQ664794
PCR size	374