GrainGenes Marker Report: k08190
Locus
k08190
Type
CAPS
Chromosome
1H
Map
Hv-HNxH602-1H 19.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaGS32E23
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = TGATTGCATCRAAATGGCATG Parent 1 SNP sequence = TGATTGCATCAAAATGGCATG Parent 2 SNP sequence = TGATTGCATCGAAATGGCATG Recognized sequence for CAPs locus = TCGA
Probe for Locus
BaGS32E23
Locus
k08190
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = rice EST AU068661 corresponds to a region of the predicated gene; unknown protein [Oryza sativa]
Type
PCR
PCR primers
Left 5' - ACACCACGACAGCATGAGAC
Right 5' - CATCTCGAGCAGAGCAACAG
Sequence
BJ466474
PCR size
371
GrainGenes Marker Report: k08190
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