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GrainGenes Marker Report: k08181

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Locus	k08181
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS32G02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = G/A SNP structure (UNICODE) = ATGCTGAAAGRACTCTTCTAG Parent 1 SNP sequence = ATGCTGAAAGGACTCTTCTAG Parent 2 SNP sequence = ATGCTGAAAGAACTCTTCTAG Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaGS32G02
Locus	k08181
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = succinyl CoA ligase beta subunit [Lycopersicon esculentum]
Type	PCR
PCR primers	Left 5' - ACTTCACGACAGGCATTTCC Right 5' - AAGTGCCAATGGACCTAACG
Sequence	BJ549795
PCR size	373