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GrainGenes Marker Report: k08168

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Locus	k08168
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 273.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS18N21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = CAATGGCTTCRACAATCCGGA Parent 1 SNP sequence = CAATGGCTTCAACAATCCGGA Parent 2 SNP sequence = CAATGGCTTCGACAATCCGGA Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaGS18N21
Locus	k08168
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Dihydrodipicolinate synthase 1, chloroplast precursor (DHDPS 1) pir WZWTH7 dihydrodipicolinate synthase (EC 4.2.1.52) precursor (clone pDA1
Type	PCR
PCR primers	Left 5' - CGACAACAATGACGACAACC Right 5' - GCACAAACAGCAACAGGTTC
Sequence	AV922607
PCR size	373