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GrainGenes Marker Report: k08122

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Locus	k08122
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 138.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS10J14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = MboI SNP = C/T SNP structure (UNICODE) = TCCCAGCTGAYCCAACCATTA Parent 1 SNP sequence = TCCCAGCTGACCCAACCATTA Parent 2 SNP sequence = TCCCAGCTGATCCAACCATTA Recognized sequence for CAPs locus = GATC SNP = A/T SNP structure (UNICODE) = ACTSTACAAGWTCTTGAA-TT Parent 1 SNP sequence = ACTCTACAAGATCTTGAA-TT Parent 2 SNP sequence = ACTGTACAAGTTCTTGAAATT
Probe for Locus	BaGS10J14
Locus	k08122
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = casein kinase II alpha [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CTCGATCATCAGCGACTTCA Right 5' - GAAGAGGCACCTTCTGCAAC
Sequence	AV917594
PCR size	374