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GrainGenes Marker Report: k08113

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Locus	k08113
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 284.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS36A16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = SacII SNP = G/A SNP structure (UNICODE) = GGTGGTCCGCRGTGGCTGGCT Parent 1 SNP sequence = GGTGGTCCGCGGTGGCTGGCT Parent 2 SNP sequence = GGTGGTCCGCAGTGGCTGGCT Recognized sequence for CAPs locus = CCGCGG
Probe for Locus	BaGS36A16
Locus	k08113
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative COP1(CONSTITUTIVE PHOTOMORPHOGENIC1)-interacting protein 7 (CIP7) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TACAATGTCACCCTTGCTGC Right 5' - AACAAGAAGAGCCGCATCAT
Sequence	BJ467106
PCR size	367