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GrainGenes Marker Report: k08085

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Locus	k08085
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 284.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS4P17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = T/C SNP structure (UNICODE) = GCATCCGTTGYTGGAGTCGCA Parent 1 SNP sequence = GCATCCGTTGTTGGAGTCGCA Parent 2 SNP sequence = GCATCCGTTGCTGGAGTCGCA SNP = C/T SNP structure (UNICODE) = GGCGGCCGCCYCCGTACCAGC Parent 1 SNP sequence = GGCGGCCGCCCCCGTACCAGC Parent 2 SNP sequence = GGCGGCCGCCTCCGTACCAGC SNP = A/C SNP structure (UNICODE) = ATCATCTTCCMGCACCGGCGG Parent 1 SNP sequence = ATCATCTTCCAGCACCGGCGG Parent 2 SNP sequence = ATCATCTTCCCGCACCGGCGG SNP = C/G SNP structure (UNICODE) = CTGCTCGCTGSTGATGCGGAT Parent 1 SNP sequence = CTGCTCGCTGCTGATGCGGAT Parent 2 SNP sequence = CTGCTCGCTGGTGATGCGGAT SNP structure (UNICODE) = GTGTTGAGCCYGAGAGCCTTC Parent 1 SNP sequence = GTGTTGAGCCCGAGAGCCTTC Parent 2 SNP sequence = GTGTTGAGCCTGAGAGCCTTC SNP = G/C SNP structure (UNICODE) = CGGGGACCTCSCCGATGTCGG Parent 1 SNP sequence = CGGGGACCTCGCCGATGTCGG Parent 2 SNP sequence = CGGGGACCTCCCCGATGTCGG SNP structure (UNICODE) = GTCCACGATGYTGTCCTTGCA Parent 1 SNP sequence = GTCCACGATGTTGTCCTTGCA Parent 2 SNP sequence = GTCCACGATGCTGTCCTTGCA
Probe for Locus	BaGS4P17
Locus	k08085
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAL31058.1 hypothetical protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CAATGAGATAGGCACGGTGA Right 5' - GATCTTCGTCAGCGCAATTT
Sequence	AV919201
PCR size	306