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GrainGenes Marker Report: k08080

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Locus	k08080
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 139.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS26O20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = A/T SNP structure (UNICODE) = CAACAGATCAWGCTTTCGTAG Parent 1 SNP sequence = CAACAGATCAAGCTTTCGTAG Parent 2 SNP sequence = CAACAGATCATGCTTTCGTAG SNP = G/C SNP structure (UNICODE) = GCGCAGCTGASAAATGACATT Parent 1 SNP sequence = GCGCAGCTGAGAAATGACATT Parent 2 SNP sequence = GCGCAGCTGACAAATGACATT SNP = A/C SNP structure (UNICODE) = AAGCTCAACCMTAGCCTTCTT Parent 1 SNP sequence = AAGCTCAACCATAGCCTTCTT Parent 2 SNP sequence = AAGCTCAACCCTAGCCTTCTT SNP = C/A SNP structure (UNICODE) = GGGCTTCATAMCATCAAGCTC Parent 1 SNP sequence = GGGCTTCATACCATCAAGCTC Parent 2 SNP sequence = GGGCTTCATAACATCAAGCTC SNP = A/G SNP structure (UNICODE) = CCAACATCAARGTGTGGTTCG Parent 1 SNP sequence = CCAACATCAAAGTGTGGTTCG Parent 2 SNP sequence = CCAACATCAAGGTGTGGTTCG SNP structure (UNICODE) = CATCGAGGCARACTTCTTAAA Parent 1 SNP sequence = CATCGAGGCAAACTTCTTAAA Parent 2 SNP sequence = CATCGAGGCAGACTTCTTAAA
Probe for Locus	BaGS26O20
Locus	k08080
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phosphofructokinase beta subunit -related [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCACTCTCTCCAACACCCTC Right 5' - GTCGTCGTCGTCGTAGTCCT
Sequence	BJ467368
PCR size	285