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GrainGenes Marker Report: k08020

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Locus	k08020
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS39G07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = T/C SNP structure (UNICODE) = ATTTTGTCATYCAGATAATTT Parent 1 SNP sequence = ATTTTGTCATTCAGATAATTT Parent 2 SNP sequence = ATTTTGTCATCCAGATAATTT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaGS39G07
Locus	k08020
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCACCGTCGATTGATCTGTA Right 5' - TCTGGTGTAATGGAGGGGAG
Sequence	BJ468573
PCR size	282