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GrainGenes Marker Report: k07741

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Locus	k07741
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 270.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS25K24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = G/C SNP structure (UNICODE) = TTGTTTTGTASAGCTGCAAAG Parent 1 SNP sequence = TTGTTTTGTAGAGCTGCAAAG Parent 2 SNP sequence = TTGTTTTGTACAGCTGCAAAG Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaGS25K24
Locus	k07741
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SNF1-related protein kinase [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - AGCTAAGGTGGTTAGTGCGG Right 5' - CAGAGTCACAGAGCCATCCA
Sequence	BJ467533
PCR size	324