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GrainGenes Marker Report: k07640

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Locus	k07640
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 84.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS4J18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = C/A SNP structure (UNICODE) = AGTCATAGTCMGCRTCCATGT Parent 1 SNP sequence = AGTCATAGTCCGCGTCCATGT Parent 2 SNP sequence = AGTCATAGTCAGCATCCATGT Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaGS4J18
Locus	k07640
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative GTPase [Oryza sativa (japonica cultivar-group)] dbj BAB61154.1 putative GTPase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCATCGACCTTGAAGAATCC Right 5' - CAGAGGACATGTCTTTGGCA
Sequence	AV834121
PCR size	363