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GrainGenes Marker Report: k07213

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Locus	k07213
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL20A03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = CTGGTCGCAARCGGCGCTATA Parent 1 SNP sequence = CTGGTCGCAAGCGGCGCTATA Parent 2 SNP sequence = CTGGTCGCAAACGGCGCTATA SNP = A/C SNP structure (UNICODE) = GTGTTGGCACMGGCAGCGGCA Parent 1 SNP sequence = GTGTTGGCACAGGCAGCGGCA Parent 2 SNP sequence = GTGTTGGCACCGGCAGCGGCA
Probe for Locus	BaAL20A03
Locus	k07213
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative arm repeat protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGTGTTTAGCACCACCCTTT Right 5' - TGAGGAGAAAAAGGAAGCCA
Sequence	BJ474587
PCR size	292