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GrainGenes Marker Report: k07212

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Locus	k07212
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL3C04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/T SNP structure (UNICODE) = TTCCGGGGATYCTTCCAGCTA Parent 1 SNP sequence = TTCCGGGGATCCTTCCAGCTA Parent 2 SNP sequence = TTCCGGGGATTCTTCCAGCTA Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaAL3C04
Locus	k07212
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = myb family transcription factor [Arabidopsis thaliana] gb AAN78321.1 TRIPTYCHON [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACAGGCACAAACGAACACA Right 5' - TTCCGACTTCTGCACTGCTA
Sequence	AV935165
PCR size	358