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GrainGenes Marker Report: k07194

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Locus	k07194
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL4D04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = A/C SNP structure (UNICODE) = CGGGGAAAACMACCGTGAAGT Parent 1 SNP sequence = CGGGGAAAACAACCGTGAAGT Parent 2 SNP sequence = CGGGGAAAACCACCGTGAAGT SNP = G/A SNP structure (UNICODE) = CACTGGTCCARGCTCAGCGAG Parent 1 SNP sequence = CACTGGTCCAGGCTCAGCGAG Parent 2 SNP sequence = CACTGGTCCAAGCTCAGCGAG SNP = C/T SNP structure (UNICODE) = GCTCCATGTCYGTGTACTGCG Parent 1 SNP sequence = GCTCCATGTCCGTGTACTGCG Parent 2 SNP sequence = GCTCCATGTCTGTGTACTGCG SNP structure (UNICODE) = CAATGTCTATRTCGTAGGCCA Parent 1 SNP sequence = CAATGTCTATGTCGTAGGCCA Parent 2 SNP sequence = CAATGTCTATATCGTAGGCCA SNP structure (UNICODE) = GCTGCTGCTGYTGCCTCCGCA Parent 1 SNP sequence = GCTGCTGCTGCTGCCTCCGCA Parent 2 SNP sequence = GCTGCTGCTGTTGCCTCCGCA
Probe for Locus	BaAL4D04
Locus	k07194
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNAJ-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GATCACATCTGACGTCCTCG Right 5' - AGAAAAGGAAGGCAAGGAGC
Sequence	AV942259
PCR size	350