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GrainGenes Marker Report: k07022

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Locus	k07022
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 135.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL2M19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = A/G SNP structure (UNICODE) = CCTAGTGGGCRTCCTCCTCCT Parent 1 SNP sequence = CCTAGTGGGCATCCTCCTCCT Parent 2 SNP sequence = CCTAGTGGGCGTCCTCCTCCT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	BaAL2M19
Locus	k07022
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative glycine decarboxylase subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACCAAATTAAGCCGACACG Right 5' - GAGTCACAAAGAAGGGCTGC
Sequence	AV928330
PCR size	381