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GrainGenes Marker Report: k06915

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Locus	k06915
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 136.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL19F02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = G/T SNP structure (UNICODE) = CCAAGCAACAKTTATCTCCAC Parent 1 SNP sequence = CCAAGCAACAGTTATCTCCAC Parent 2 SNP sequence = CCAAGCAACATTTATCTCCAC SNP = C/T SNP structure (UNICODE) = TCAAAACCTTYCTGACTTATG Parent 1 SNP sequence = TCAAAACCTTCCTGACTTATG Parent 2 SNP sequence = TCAAAACCTTTCTGACTTATG SNP = G/A SNP structure (UNICODE) = TGCTGAATTTRCTTGGAAAGA Parent 1 SNP sequence = TGCTGAATTTGCTTGGAAAGA Parent 2 SNP sequence = TGCTGAATTTACTTGGAAAGA SNP = G/C SNP structure (UNICODE) = TTTACAGATASAACTTGCCTC Parent 1 SNP sequence = TTTACAGATAGAACTTGCCTC Parent 2 SNP sequence = TTTACAGATACAACTTGCCTC SNP = T/A SNP structure (UNICODE) = CTAGCCTTCCWCCTGATTTTA Parent 1 SNP sequence = CTAGCCTTCCTCCTGATTTTA Parent 2 SNP sequence = CTAGCCTTCCACCTGATTTTA
Probe for Locus	BaAL19F02
Locus	k06915
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = csAtPR5 [Aegilops tauschii]
Type	PCR
PCR primers	Left 5' - GTTGAGGGGAATCCCAAAGT Right 5' - CTGGCCCCGATCAAATACTA
Sequence	BJ474156
PCR size	361