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GrainGenes Marker Report: k06888

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Locus	k06888
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 56.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL17L08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = T/A SNP structure (UNICODE) = GTTCAGTCAGWGTTTCTCCCA Parent 1 SNP sequence = GTTCAGTCAGTGTTTCTCCCA Parent 2 SNP sequence = GTTCAGTCAGAGTTTCTCCCA Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	BaAL17L08
Locus	k06888
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative histidine kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCGAAATACGTCTCACACA Right 5' - CACCTCTCCGACGAACTCTC
Sequence	BJ473916
PCR size	376