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GrainGenes Marker Report: k06865

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Locus	k06865
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 130.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAL13F02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/A SNP structure (UNICODE) = CTAATTGGTCMGGTGTAGAGT Parent 1 SNP sequence = CTAATTGGTCCGGTGTAGAGT Parent 2 SNP sequence = CTAATTGGTCAGGTGTAGAGT SNP = T/C SNP structure (UNICODE) = ATGCAATGCAYAGTCGCTTTA Parent 1 SNP sequence = ATGCAATGCATAGTCGCTTTA Parent 2 SNP sequence = ATGCAATGCACAGTCGCTTTA SNP = T/G SNP structure (UNICODE) = CATAGCTGCCKTCAAATAAAA Parent 1 SNP sequence = CATAGCTGCCTTCAAATAAAA Parent 2 SNP sequence = CATAGCTGCCGTCAAATAAAA SNP structure (UNICODE) = CGCCAACATTKATGACACCTA Parent 1 SNP sequence = CGCCAACATTTATGACACCTA Parent 2 SNP sequence = CGCCAACATTGATGACACCTA
Probe for Locus	BaAL13F02
Locus	k06865
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative steroid 22-alpha-hydroxylase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGCCTGTTCATCGAACAAAT Right 5' - ACAACAAGAAGTCCCGCATC
Sequence	BJ474344
PCR size	359