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GrainGenes Marker Report: k06811

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Locus	k06811
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 202
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK35F14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/G SNP structure (UNICODE) = TGCACCCTCAKGCATCCATAC Parent 1 SNP sequence = TGCACCCTCATGCATCCATAC Parent 2 SNP sequence = TGCACCCTCAGGCATCCATAC Recognized sequence for CAPs locus = CTNAG
Probe for Locus	BaAK35F14
Locus	k06811
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0070C17.10 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACCCATGACTTTGGAATGGA Right 5' - TGATCCTGCAGCTTATGTGG
Sequence	BJ456207
PCR size	379