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GrainGenes Marker Report: k06799

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Locus	k06799
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 180
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK32N13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/A SNP structure (UNICODE) = TCACATGCAAMATCTATCAGT Parent 1 SNP sequence = TCACATGCAACATCTATCAGT Parent 2 SNP sequence = TCACATGCAAAATCTATCAGT SNP = G/A SNP structure (UNICODE) = ACTTGCCGGGRACGAAGTTGG Parent 1 SNP sequence = ACTTGCCGGGGACGAAGTTGG Parent 2 SNP sequence = ACTTGCCGGGAACGAAGTTGG SNP structure (UNICODE) = TGGTGGCGAARGCCCAGGCGT Parent 1 SNP sequence = TGGTGGCGAAGGCCCAGGCGT Parent 2 SNP sequence = TGGTGGCGAAAGCCCAGGCGT SNP = A/G SNP structure (UNICODE) = CGAAGAAGCCRAACATGGAGA Parent 1 SNP sequence = CGAAGAAGCCAAACATGGAGA Parent 2 SNP sequence = CGAAGAAGCCGAACATGGAGA
Probe for Locus	BaAK32N13
Locus	k06799
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Chlorophyll A-B binding protein 13, chloroplast precursor (LHCII type I CAB-13) (LHCP)
Type	PCR
PCR primers	Left 5' - GCGGAGAACATACAAGGCAT Right 5' - GCTATGCAAACGGAATTGGT
Sequence	BJ451134
PCR size	379