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GrainGenes Marker Report: k06764

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Locus	k06764
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 40.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK29M05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = T/C SNP structure (UNICODE) = AGACGCAGGAYCTGTCGAAGT Parent 1 SNP sequence = AGACGCAGGATCTGTCGAAGT Parent 2 SNP sequence = AGACGCAGGACCTGTCGAAGT Recognized sequence for CAPs locus = GGWCC
Probe for Locus	BaAK29M05
Locus	k06764
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCAGGGATCCATCAAACACT Right 5' - ATGCCATGTGCATCAACTGT
Sequence	BJ457887
PCR size	400