Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06715

[Submit comment/correction]

Locus	k06715
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 88.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK16E24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/T SNP structure (UNICODE) = ACTCGCATGCYTTCAACAGCA Parent 1 SNP sequence = ACTCGCATGCCTTCAACAGCA Parent 2 SNP sequence = ACTCGCATGCTTTCAACAGCA SNP = A/C SNP structure (UNICODE) = CTGAGCTGACMCACACAAGAT Parent 1 SNP sequence = CTGAGCTGACACACACAAGAT Parent 2 SNP sequence = CTGAGCTGACCCACACAAGAT SNP = -/A SNP structure (UNICODE) = ATGCTCACAT-/ATTTCTACACA Parent 1 SNP sequence = ATGCTCACAT-TTTCTACACA Parent 2 SNP sequence = ATGCTCACATATTTCTACACA SNP structure (UNICODE) = TATTCGAACC-/ACTGCTATGCT Parent 1 SNP sequence = TATTCGAACC-CTGCTATGCT Parent 2 SNP sequence = TATTCGAACCACTGCTATGCT
Probe for Locus	BaAK16E24
Locus	k06715
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative thiamin pyrophosphokinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAGCCAAAATCCAGAAAGCA Right 5' - ACGAATAGCATGTTGACCCC
Sequence	BJ455315
PCR size	398