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GrainGenes Marker Report: k06712

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Locus	k06712
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 212.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK22E05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/A SNP structure (UNICODE) = TGAGATAGGGRCCCCAGGAAT Parent 1 SNP sequence = TGAGATAGGGGCCCCAGGAAT Parent 2 SNP sequence = TGAGATAGGGACCCCAGGAAT Recognized sequence for CAPs locus = GGCC
Probe for Locus	BaAK22E05
Locus	k06712
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = acclimation protein 2 - barley emb CAA66490.1 BLT14.2 protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - TTGATAGGGACAAGGCTGCT Right 5' - CTTTTCCGCGCATCACTT
Sequence	AV909846
PCR size	392