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GrainGenes Marker Report: k06711

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Locus	k06711
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 292.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK24P09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = T/A SNP structure (UNICODE) = CTCCCTCTATWAACTAATATA Parent 1 SNP sequence = CTCCCTCTATTAACTAATATA Parent 2 SNP sequence = CTCCCTCTATAAACTAATATA SNP structure (UNICODE) = GCAGCTAAACWGGCTAGGCAT Parent 1 SNP sequence = GCAGCTAAACTGGCTAGGCAT Parent 2 SNP sequence = GCAGCTAAACAGGCTAGGCAT SNP = G/C SNP structure (UNICODE) = TATGCTTGCASACCCTCTGCA Parent 1 SNP sequence = TATGCTTGCAGACCCTCTGCA Parent 2 SNP sequence = TATGCTTGCACACCCTCTGCA
Probe for Locus	BaAK24P09
Locus	k06711
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Glutathione S-transferase 1 (GST class-phi) pir T06509 probable glutathione transferase (EC 2.5.1.18) gSTA1 - wheat
Type	PCR
PCR primers	Left 5' - CACGTATCGTGACGTAACAGG Right 5' - AACGACGAGAGCCTGGAGTA
Sequence	BJ454582
PCR size	390