Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06668

[Submit comment/correction]

Locus	k06668
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 127.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK21J17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = A/C SNP structure (UNICODE) = GTGCATCGTAMATCATCAGGG Parent 1 SNP sequence = GTGCATCGTAAATCATCAGGG Parent 2 SNP sequence = GTGCATCGTACATCATCAGGG Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaAK21J17
Locus	k06668
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - AGCAAGGGCAAGTAGCAAAA Right 5' - GAATGCGCTTGGTGGTATCT
Sequence	BJ462026
PCR size	282