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GrainGenes Marker Report: k06633

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Locus	k06633
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 228.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK4J17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = AGACCCCCATYGGGGCCGCCA Parent 1 SNP sequence = AGACCCCCATCGGGGCCGCCA Parent 2 SNP sequence = AGACCCCCATTGGGGCCGCCA SNP = C/G SNP structure (UNICODE) = GCGACGCCGASGCGGAGTAGC Parent 1 SNP sequence = GCGACGCCGACGCGGAGTAGC Parent 2 SNP sequence = GCGACGCCGAGGCGGAGTAGC
Probe for Locus	BaAK4J17
Locus	k06633
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative zinc finger protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TACAGACACCCCCATCTTCC Right 5' - GGCGAATGGTACAATCAGGA
Sequence	AV912599
PCR size	285