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GrainGenes Marker Report: k06632

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Locus	k06632
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 69.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK30M07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Bsp1286I SNP = T/C SNP structure (UNICODE) = CTGTAGTGCTYCTTCGTCAGG Parent 1 SNP sequence = CTGTAGTGCTTCTTCGTCAGG Parent 2 SNP sequence = CTGTAGTGCTCCTTCGTCAGG Recognized sequence for CAPs locus = GDGCHC
Probe for Locus	BaAK30M07
Locus	k06632
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = metallothioneine type2 [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - TAGATGGCCTCAGTCGGGTA Right 5' - GAAGCCTCATTCCGTCTTGA
Sequence	AV945803
PCR size	281