Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k06627

[Submit comment/correction]

Locus	k06627
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK33B10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 32 ] SNP = A/G SNP structure (UNICODE) = GAAAAAAAGARTATGGCAGCC Parent 1 SNP sequence = GAAAAAAAGAATATGGCAGCC Parent 2 SNP sequence = GAAAAAAAGAGTATGGCAGCC SNP = A/T SNP structure (UNICODE) = GCAATCTTACWAACAAAATCA Parent 1 SNP sequence = GCAATCTTACAAACAAAATCA Parent 2 SNP sequence = GCAATCTTACTAACAAAATCA SNP = A/C SNP structure (UNICODE) = AGAAATAGGTMCTTCGATTAT Parent 1 SNP sequence = AGAAATAGGTACTTCGATTAT Parent 2 SNP sequence = AGAAATAGGTCCTTCGATTAT SNP = G/A SNP structure (UNICODE) = GATGTATGAARAACCTTGGTA Parent 1 SNP sequence = GATGTATGAAGAACCTTGGTA Parent 2 SNP sequence = GATGTATGAAAAACCTTGGTA SNP = T/A SNP structure (UNICODE) = GTACGGACTAWAACGTTGCGC Parent 1 SNP sequence = GTACGGACTATAACGTTGCGC Parent 2 SNP sequence = GTACGGACTAAAACGTTGCGC SNP = C/T SNP structure (UNICODE) = GCTTCTAGTTYTGTTGGTGAG Parent 1 SNP sequence = GCTTCTAGTTCTGTTGGTGAG Parent 2 SNP sequence = GCTTCTAGTTTTGTTGGTGAG SNP = T/G SNP structure (UNICODE) = GTCAATATGAKAGAAATAGGT Parent 1 SNP sequence = GTCAATATGATAGAAATAGGT Parent 2 SNP sequence = GTCAATATGAGAGAAATAGGT SNP = C/A SNP structure (UNICODE) = AGGCATGCCAMACTGGAGTAT Parent 1 SNP sequence = AGGCATGCCACACTGGAGTAT Parent 2 SNP sequence = AGGCATGCCAAACTGGAGTAT
Probe for Locus	BaAK33B10
Locus	k06627
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = heat shock factor-binding protein 1 [Zea mays] gb AAM15929.1 heat shock factor-binding protein 1 [Zea mays]
Type	PCR
PCR primers	Left 5' - CATGACAGGACAGTGACGCT Right 5' - CGACCGATGACTTTGAGGAT
Sequence	BJ458692
PCR size	267