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GrainGenes Marker Report: k06462

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Locus	k06462
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 36.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK14J02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = ACAGCCTTACRTCGGGGAACT Parent 1 SNP sequence = ACAGCCTTACATCGGGGAACT Parent 2 SNP sequence = ACAGCCTTACGTCGGGGAACT SNP = G/C SNP structure (UNICODE) = TGAAGCCGACSGTTCTGTCCA Parent 1 SNP sequence = TGAAGCCGACGGTTCTGTCCA Parent 2 SNP sequence = TGAAGCCGACCGTTCTGTCCA
Probe for Locus	BaAK14J02
Locus	k06462
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ubiquinone oxidoreductase subunit 1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATCGAGTGGCTCAACGAAC Right 5' - TCGTGCTCAAGAACACCAAC
Sequence	BJ454730
PCR size	433