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GrainGenes Marker Report: k06303

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Locus	k06303
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 276.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK44J08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = TGATGGTATTRTTGCTCCCCG Parent 1 SNP sequence = TGATGGTATTGTTGCTCCCCG Parent 2 SNP sequence = TGATGGTATTATTGCTCCCCG SNP = T/C SNP structure (UNICODE) = TGTGGAAGCTYCCGGATACAT Parent 1 SNP sequence = TGTGGAAGCTTCCGGATACAT Parent 2 SNP sequence = TGTGGAAGCTCCCGGATACAT
Probe for Locus	BaAK44J08
Locus	k06303
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ice recrystallisation inhibition protein [Lolium perenne]
Type	PCR
PCR primers	Left 5' - ACACACATCCACACAGGCAT Right 5' - TAAACTGGAGCGTGAGGAGC
Sequence	BJ461352
PCR size	363