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GrainGenes Marker Report: k05245

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Locus	k05245
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 252.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd26p09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = A/- SNP structure (UNICODE) = CCAGTCATCAA/-CTATGTCTAT Parent 1 SNP sequence = CCAGTCATCAACTATGTCTAT Parent 2 SNP sequence = CCAGTCATCA-CTATGTCTAT SNP = C/- SNP structure (UNICODE) = ATCTATCCACC/-ACCCAGTCAT Parent 1 SNP sequence = ATCTATCCACCACCCAGTCAT Parent 2 SNP sequence = ATCTATCCAC-ACCCAGTCAT SNP structure (UNICODE) = GGTCCCGAGAA/-TAGTGCGGAT Parent 1 SNP sequence = GGTCCCGAGAATAGTGCGGAT Parent 2 SNP sequence = GGTCCCGAGA-TAGTGCGGAT
Probe for Locus	basd26p09
Locus	k05245
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAO18451.1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCTTTATGGCTTTGCACAT Right 5' - ACCGACAACAACGTCAACAA
Sequence	AV837124
PCR size	464