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GrainGenes Marker Report: k05231

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Locus	k05231
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 10
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd2j05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HphI SNP = G/A SNP structure (UNICODE) = ACCAACACTCRCCACCATAAG Parent 1 SNP sequence = ACCAACACTCGCCACCATAAG Parent 2 SNP sequence = ACCAACACTCACCACCATAAG Recognized sequence for CAPs locus = NNNNNNNTCACC
Probe for Locus	basd2j05
Locus	k05231
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAGTCTCACAGGCTCCGTTC Right 5' - GTGGGAGAGGCAGAAGTTTG
Sequence	AV927562
PCR size	409