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GrainGenes Marker Report: k05204

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Locus	k05204
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 216
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd27n01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = G/C SNP structure (UNICODE) = AACCCCGCCASTTGTATAAGA Parent 1 SNP sequence = AACCCCGCCAGTTGTATAAGA Parent 2 SNP sequence = AACCCCGCCACTTGTATAAGA SNP = C/T SNP structure (UNICODE) = TATCAGGGATYCAGGAGGGGA Parent 1 SNP sequence = TATCAGGGATCCAGGAGGGGA Parent 2 SNP sequence = TATCAGGGATTCAGGAGGGGA SNP structure (UNICODE) = TTCACGAGTGYACACTACAAT Parent 1 SNP sequence = TTCACGAGTGCACACTACAAT Parent 2 SNP sequence = TTCACGAGTGTACACTACAAT SNP structure (UNICODE) = CAGGAGGGGASGAGCGATCGC Parent 1 SNP sequence = CAGGAGGGGAGGAGCGATCGC Parent 2 SNP sequence = CAGGAGGGGACGAGCGATCGC
Probe for Locus	basd27n01
Locus	k05204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cysteine protease, papain-like (XBCP3) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCGAAGGCACTTGACATTTT Right 5' - GCAAAAGATCATCAGCAGCA
Sequence	AV928295
PCR size	486