GrainGenes Marker Report: k05194
Locus
k05194
Type
CAPS
Chromosome
1H
Map
Hv-HNxH602-1H 170.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd2b18
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = C/T SNP structure (UNICODE) = CGAAATATGGYCGCACCTGTG Parent 1 SNP sequence = CGAAATATGGCCGCACCTGTG Parent 2 SNP sequence = CGAAATATGGTCGCACCTGTG Recognized sequence for CAPs locus = GGCC
Probe for Locus
basd2b18
Locus
k05194
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = seven transmembrane protein Mlo8 [Zea mays]
Type
PCR
PCR primers
Left 5' - TCTTCACTCGGCCTTGATCT
Right 5' - GAAGCAGGGCTCCATTACAA
Sequence
AV836759
PCR size
371
GrainGenes Marker Report: k05194
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