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GrainGenes Marker Report: k05056

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Locus	k05056
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 95.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd1l17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = T/C SNP structure (UNICODE) = CGATGGCGAAYGACTTCAAGA Parent 1 SNP sequence = CGATGGCGAATGACTTCAAGA Parent 2 SNP sequence = CGATGGCGAACGACTTCAAGA SNP = G/T SNP structure (UNICODE) = AACGGACCCTKCGGCGGCTCA Parent 1 SNP sequence = AACGGACCCTGCGGCGGCTCA Parent 2 SNP sequence = AACGGACCCTTCGGCGGCTCA SNP = G/A SNP structure (UNICODE) = AGGAGTGGCCRATGATGTACG Parent 1 SNP sequence = AGGAGTGGCCGATGATGTACG Parent 2 SNP sequence = AGGAGTGGCCAATGATGTACG SNP = A/G SNP structure (UNICODE) = GAAGGAACGARTAGGCGTAGT Parent 1 SNP sequence = GAAGGAACGAATAGGCGTAGT Parent 2 SNP sequence = GAAGGAACGAGTAGGCGTAGT SNP = C/T SNP structure (UNICODE) = GCGTCACCGAYGGGCCCCTGC Parent 1 SNP sequence = GCGTCACCGACGGGCCCCTGC Parent 2 SNP sequence = GCGTCACCGATGGGCCCCTGC
Probe for Locus	basd1l17
Locus	k05056
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = HAK2 [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - GAAATGAAAACTAGCTCCCAGC Right 5' - TCAGCGAAACATGATGTGGT
PCR size	362