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GrainGenes Marker Report: k04894

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Locus	k04894
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 334.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd16e16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = T/C SNP structure (UNICODE) = TCATTCAAGCYGGCAATAGCA Parent 1 SNP sequence = TCATTCAAGCTGGCAATAGCA Parent 2 SNP sequence = TCATTCAAGCCGGCAATAGCA Recognized sequence for CAPs locus = CCGG
Probe for Locus	basd16e16
Locus	k04894
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = glutamyl-tRNA(Gln) amidotransferase, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGTTTTGTTGCCAAACGTCC Right 5' - GCTTCATACCTTCGCCTCTG
Sequence	AV929712
PCR size	433