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GrainGenes Marker Report: k04849

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Locus	k04849
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 70.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd14k04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = ATGCTGCCTARAACCACTTTG Parent 1 SNP sequence = ATGCTGCCTAGAACCACTTTG Parent 2 SNP sequence = ATGCTGCCTAAAACCACTTTG SNP = G/T SNP structure (UNICODE) = TGGCCTAGAAKCATGCTGCCT Parent 1 SNP sequence = TGGCCTAGAAGCATGCTGCCT Parent 2 SNP sequence = TGGCCTAGAATCATGCTGCCT SNP structure (UNICODE) = GGCCTTCGACRCTAAGCTTTG Parent 1 SNP sequence = GGCCTTCGACGCTAAGCTTTG Parent 2 SNP sequence = GGCCTTCGACACTAAGCTTTG
Probe for Locus	basd14k04
Locus	k04849
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0434B04.3 [Oryza sativa (japonica cultivar-group)] dbj BAB21137.1 P0416D03.25 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATTTCGAAGACAAGCCATGC Right 5' - ATCAGCGAAAGGAAGCTCAA
Sequence	AV929545
PCR size	358