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GrainGenes Marker Report: k04828

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Locus	k04828
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 127.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15a02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = CAGCGGAGCCRGTCATAGGTT Parent 1 SNP sequence = CAGCGGAGCCGGTCATAGGTT Parent 2 SNP sequence = CAGCGGAGCCAGTCATAGGTT Recognized sequence for CAPs locus = CCGG
Probe for Locus	basd15a02
Locus	k04828
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative trehalose-6-phosphate synthase homolog [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGCAATCCACCATGAAACC Right 5' - AGTGCTACCTGTCCACCACC
Sequence	AV928593
PCR size	371